MRIQC: individual T1w report

Summary

Subject ID: 036_ControlPre.
Date and time: 2018-05-06, 21:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2585182524435072
cnr			5.001825680603806
efc			0.5603726243889178
fber			135.21673583984375
fwhm	avg		3.9554766666666663
fwhm	x		3.80004
fwhm	y		4.18359
fwhm	z		3.8828
icvs	csf		0.1945731913655242
icvs	gm		0.4525760176914384
icvs	wm		0.3528507909430374
inu	med		0.7459981441497803
inu	range		0.23316314816474915
qi	1		0.0
qi	2		0.0008839130460125574
rpve	csf		24.77011754883034
rpve	gm		12.005517817608002
rpve	wm		18.423989195444225
size	x		180
size	y		256
size	z		256
snr	csf		2.7914906714251533
snr	gm		10.35265801586741
snr	total		12.285819045861826
snr	wm		23.713308450292914
snrd	csf		18.96518199927802
snrd	gm		34.695091226333254
snrd	total		36.359037585370395
snrd	wm		55.41683953049991
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8726039982018552
summary	bg	mad	11.822071075439453
summary	bg	mean	43.378990173339844
summary	bg	median	42.30619812011719
summary	bg	n	3032375.0
summary	bg	p05	25.517342376708985
summary	bg	p95	65.16958465576171
summary	bg	stdv	12.38011646270752
summary	csf	k	3.0407499188952123
summary	csf	mad	132.41250610351562
summary	csf	mean	336.4803161621094
summary	csf	median	342.2306213378906
summary	csf	n	18636.0
summary	csf	p05	152.01768493652344
summary	csf	p95	518.9057312011719
summary	csf	stdv	122.59451293945312
summary	gm	k	0.19677669253256003
summary	gm	mad	59.189754486083984
summary	gm	mean	626.4169311523438
summary	gm	median	626.080078125
summary	gm	n	44158.0
summary	gm	p05	526.9338653564453
summary	gm	p95	725.4833251953125
summary	gm	stdv	60.474613189697266
summary	wm	k	1.0424399635624635
summary	wm	mad	37.477516174316406
summary	wm	mean	998.1856079101562
summary	wm	median	1000.00830078125
summary	wm	n	201824.0
summary	wm	p05	924.6662353515625
summary	wm	p95	1063.2852905273437
summary	wm	stdv	42.170658111572266
tpm	overlap	csf	0.21670733392238617
tpm	overlap	gm	0.5331752300262451
tpm	overlap	wm	0.5577138662338257
wm2max			0.7075300138773978

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	892d595d25e959bd87664e396f372dc1
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.