MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2585182524435072
cnr5.001825680603806
efc0.5603726243889178
fber135.21673583984375
fwhmavg3.9554766666666663
fwhmx3.80004
fwhmy4.18359
fwhmz3.8828
icvscsf0.1945731913655242
icvsgm0.4525760176914384
icvswm0.3528507909430374
inumed0.7459981441497803
inurange0.23316314816474915
qi10.0
qi20.0008839130460125574
rpvecsf24.77011754883034
rpvegm12.005517817608002
rpvewm18.423989195444225
sizex180
sizey256
sizez256
snrcsf2.7914906714251533
snrgm10.35265801586741
snrtotal12.285819045861826
snrwm23.713308450292914
snrdcsf18.96518199927802
snrdgm34.695091226333254
snrdtotal36.359037585370395
snrdwm55.41683953049991
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8726039982018552
summarybgmad11.822071075439453
summarybgmean43.378990173339844
summarybgmedian42.30619812011719
summarybgn3032375.0
summarybgp0525.517342376708985
summarybgp9565.16958465576171
summarybgstdv12.38011646270752
summarycsfk3.0407499188952123
summarycsfmad132.41250610351562
summarycsfmean336.4803161621094
summarycsfmedian342.2306213378906
summarycsfn18636.0
summarycsfp05152.01768493652344
summarycsfp95518.9057312011719
summarycsfstdv122.59451293945312
summarygmk0.19677669253256003
summarygmmad59.189754486083984
summarygmmean626.4169311523438
summarygmmedian626.080078125
summarygmn44158.0
summarygmp05526.9338653564453
summarygmp95725.4833251953125
summarygmstdv60.474613189697266
summarywmk1.0424399635624635
summarywmmad37.477516174316406
summarywmmean998.1856079101562
summarywmmedian1000.00830078125
summarywmn201824.0
summarywmp05924.6662353515625
summarywmp951063.2852905273437
summarywmstdv42.170658111572266
tpmoverlapcsf0.21670733392238617
tpmoverlapgm0.5331752300262451
tpmoverlapwm0.5577138662338257
wm2max0.7075300138773978

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum892d595d25e959bd87664e396f372dc1
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.